Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs35156922 chr2:178799893 C/T 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs35209994 chr22:18462871 AG/A 1.49E-7 494 30.8 31.9 27.37 KM Plot
PRAD rs35211242 chr22:23482483 G/A 7.39E-8 490 31.18 29.05 9.65 KM Plot
PRAD rs35228404 chr11:24246864 A/G 0.000162 492 30.87 32.9 20.47 KM Plot
PRAD rs35267683 chr2:178796796 T/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs35267698 chr2:178788758 A/G 4.16E-5 493 30.8 31.93 20.48 KM Plot
PRAD rs35269654 chr6:15490491 A/AT 3.21E-5 492 30.8 31.93 29.25 KM Plot
PRAD rs35276197 chr2:131716846 T/C 4.8E-5 487 31.23 31.25 20.12 KM Plot
PRAD rs35277317 chr2:178797498 C/G 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs35278384 chr7:43571280 A/G 7.72E-6 485 31.33 30.97 14.4 KM Plot
PRAD rs35290239 chr8:71931016 A/T 4.06E-5 494 31.18 29.97 24.27 KM Plot
PRAD rs35291651 chr7:6777369 T/C 3.63E-5 490 31 30.2 35.28 KM Plot
PRAD rs35292362 chr22:18449644 A/AG 2.94E-6 489 30.8 31.9 27.08 KM Plot
PRAD rs35292793 chr17:62992632 T/C 1.04E-8 481 30.87 31.62 19.63 KM Plot
PRAD rs35300203 chr4:189963721 A/G 2.18E-9 478 31.43 28.57 28.77 KM Plot